STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uxaCPFAM: Glucuronate isomerase; KEGG: eca:ECA0645 glucuronate isomerase. (469 aa)    
Predicted Functional Partners:
uxaB
PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: eca:ECA0646 altronate oxidoreductase; Belongs to the mannitol dehydrogenase family. UxaB subfamily.
 
 
 0.995
PC1_0058
PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: eca:ECA4383 altronate oxidoreductase.
 
 
 0.979
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate; Belongs to the mannonate dehydratase family.
 
  
 0.961
PC1_0693
PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: eca:ECA0819 putative D-mannonate oxidoreductase.
 
 
 0.957
PC1_0805
PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: eca:ECA0920 carbohydrate oxidoreductase.
 
 
 0.956
PC1_2125
PFAM: glycoside hydrolase family 28; SMART: Parallel beta-helix repeat; KEGG: aca:ACP_2679 polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
 
  
 0.950
PC1_0989
PFAM: glycoside hydrolase family 28; KEGG: eca:ECA1095 endo-polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
 
  
 0.930
PC1_0803
PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: eca:ECA0918 putative dehydrogenase.
     
 0.905
PC1_0531
PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; KEGG: eca:ECA0647 altronate hydrolase.
 
  
 0.874
PC1_3622
Xylan 1,4-beta-xylosidase; PFAM: glycoside hydrolase family 43; KEGG: eca:ECA3847 putative xylosidase/arabinosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.847
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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