node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
rpmA | rpsB | PC1_0559 | PC1_0941 | TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: eca:ECA0691 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: eca:ECA1031 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.978 |
rpmA | rpsD | PC1_0559 | PC1_3798 | TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: eca:ECA0691 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.979 |
rpmA | rpsH | PC1_0559 | PC1_3808 | TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: eca:ECA0691 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.973 |
rpmA | rpsI | PC1_0559 | PC1_0293 | TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: eca:ECA0691 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | PFAM: ribosomal protein S9; KEGG: set:SEN3177 30S ribosomal subunit protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.980 |
rpmA | rpsL | PC1_0559 | PC1_3830 | TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: eca:ECA0691 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.981 |
rpmA | rpsM | PC1_0559 | PC1_3800 | TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: eca:ECA0691 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | Ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.967 |
rpmA | rpsO | PC1_0559 | PC1_0588 | TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: eca:ECA0691 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.991 |
rpmA | rpsP | PC1_0559 | PC1_3203 | TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: eca:ECA0691 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: eca:ECA3359 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.980 |
rpmA | rpsQ | PC1_0559 | PC1_3813 | TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: eca:ECA0691 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.965 |
rpmA | rpsS | PC1_0559 | PC1_3818 | TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: eca:ECA0691 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.958 |
rpsB | rpmA | PC1_0941 | PC1_0559 | TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: eca:ECA1031 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: eca:ECA0691 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.978 |
rpsB | rpsD | PC1_0941 | PC1_3798 | TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: eca:ECA1031 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.994 |
rpsB | rpsH | PC1_0941 | PC1_3808 | TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: eca:ECA1031 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.994 |
rpsB | rpsI | PC1_0941 | PC1_0293 | TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: eca:ECA1031 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | PFAM: ribosomal protein S9; KEGG: set:SEN3177 30S ribosomal subunit protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.994 |
rpsB | rpsL | PC1_0941 | PC1_3830 | TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: eca:ECA1031 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.995 |
rpsB | rpsM | PC1_0941 | PC1_3800 | TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: eca:ECA1031 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.995 |
rpsB | rpsO | PC1_0941 | PC1_0588 | TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: eca:ECA1031 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.992 |
rpsB | rpsP | PC1_0941 | PC1_3203 | TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: eca:ECA1031 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: eca:ECA3359 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.994 |
rpsB | rpsQ | PC1_0941 | PC1_3813 | TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: eca:ECA1031 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.991 |
rpsB | rpsS | PC1_0941 | PC1_3818 | TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: eca:ECA1031 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.994 |