STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PC1_0682PFAM: Rhamnogalacturonate lyase; KEGG: eca:ECA0804 rhamnogalacturonate lyase. (576 aa)    
Predicted Functional Partners:
PC1_1371
PFAM: Pectate lyase/Amb allergen; SMART: Pectate lyase/Amb allergen; KEGG: eca:ECA1499 pectin lyase.
  
   
 0.745
PC1_1530
Peptidase T; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family.
      
 0.535
argE
KEGG: eca:ECA0191 acetylornithine deacetylase; TIGRFAM: acetylornithine deacetylase (ArgE); PFAM: peptidase M20; peptidase dimerisation domain protein; Belongs to the peptidase M20A family. ArgE subfamily.
      
 0.535
PC1_3379
PFAM: glycosyl hydrolase family 88; KEGG: eca:ECA3559 plant-inducible protein.
  
   
 0.529
PC1_0143
KEGG: eca:ECA4303 hypothetical protein.
  
     0.521
PC1_3047
PFAM: Pectinesterase; KEGG: eca:ECA3253 pectinesterase A.
  
   
 0.520
pepT
Peptidase T; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family.
      
 0.516
PC1_1092
PFAM: glycoside hydrolase family 28; KEGG: eca:ECA1190 putative polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
  
   
 0.508
PC1_2125
PFAM: glycoside hydrolase family 28; SMART: Parallel beta-helix repeat; KEGG: aca:ACP_2679 polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
  
   
 0.495
PC1_2863
PFAM: Pectate lyase/Amb allergen; SMART: Pectate lyase/Amb allergen; KEGG: eca:ECA3112 pectate lyase.
  
   
 0.491
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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