STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PC1_0984PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: eca:ECA1089 hypothetical protein. (414 aa)    
Predicted Functional Partners:
PC1_0982
KEGG: eca:ECA1087 putative lipoprotein.
 
     0.942
PC1_0983
KEGG: eca:ECA1088 hypothetical protein.
 
     0.941
PC1_0981
Diguanylate cyclase; KEGG: eca:ECA1086 putative signaling protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein.
  
  
 0.756
PC1_0301
Multi-sensor hybrid histidine kinase; KEGG: eca:ECA0314 aerobic respiration control sensor protein ArcB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; Hpt domain protein; PAS domain containing protein.
 
 
 0.579
PC1_3391
Hpt sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Hpt domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; Hpt domain protein; histidine kinase HAMP region domain protein; KEGG: eca:ECA3571 hybrid sensory histidine kinase BarA.
  
 
 0.560
PC1_0985
KEGG: eca:ECA1090 putative lipoprotein.
       0.548
PC1_0980
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eca:ECA1085 LysR family transcriptional regulator.
  
    0.545
PC1_1449
PFAM: CheW domain protein; response regulator receiver; SMART: CheW domain protein; response regulator receiver; KEGG: eca:ECA1568 putative chemotaxis signal transduction protein.
 
 
 0.529
PC1_2613
KEGG: eca:ECA1687 flagellar motor protein MotA.
 
  
 0.513
PC1_3663
Diguanylate cyclase; KEGG: eca:ECA3886 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein.
  
 
 0.512
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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