STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araAL-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (501 aa)    
Predicted Functional Partners:
araB
TIGRFAM: L-ribulokinase; PFAM: carbohydrate kinase FGGY; KEGG: eca:ECA2274 ribulokinase.
 
 
 0.998
PC1_2362
TIGRFAM: L-ribulose-5-phosphate 4-epimerase; PFAM: class II aldolase/adducin family protein; KEGG: eca:ECA1960 L-ribulose-5-phosphate 4-epimerase.
 
 
 0.973
PC1_3698
TIGRFAM: L-ribulose-5-phosphate 4-epimerase; PFAM: class II aldolase/adducin family protein; KEGG: spe:Spro_3939 L-ribulose-5-phosphate 4-epimerase.
 
 
 0.973
PC1_3622
Xylan 1,4-beta-xylosidase; PFAM: glycoside hydrolase family 43; KEGG: eca:ECA3847 putative xylosidase/arabinosidase; Belongs to the glycosyl hydrolase 43 family.
 
 
 0.883
PC1_0059
PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: eca:ECA4382 putative zinc-binding dehydrogenase.
    
 0.815
PC1_0700
PFAM: glycoside hydrolase family 43; KEGG: kpn:KPN_03423 putative glycoside hydrolase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.601
PC1_0116
PFAM: class II aldolase/adducin family protein; KEGG: eca:ECA4329 putative aldolase.
 
  
 0.527
PC1_2029
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: eca:ECA2273 L-arabinose-binding periplasmic protein.
 
  
 0.521
PC1_2032
Transcriptional regulator, AraC family; PFAM: AraC protein arabinose-binding/dimerisation; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: eca:ECA2270 DNA-binding transcriptional regulator AraC.
 
   
 0.464
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
 
   
 0.460
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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