STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hspQHemimethylated DNA binding protein; Involved in the degradation of certain denaturated proteins, including DnaA, during heat shock stress; Belongs to the HspQ family. (102 aa)    
Predicted Functional Partners:
PC1_1065
PFAM: Haemolysin expression modulating family protein; KEGG: eca:ECA1165 hemolysin expression-modulating protein.
  
   
 0.668
PC1_2442
PFAM: LPP repeat-containing protein; KEGG: eca:ECA1866 major outer membrane lipoprotein.
  
     0.663
PC1_1837
PFAM: DNA polymerase II beta subunit; KEGG: eca:ECA2475 DNA polymerase III subunit theta.
  
     0.604
wzyE
WzyE family protein; Probably involved in the polymerization of enterobacterial common antigen (ECA) trisaccharide repeat units; Belongs to the WzyE family.
  
     0.603
wecF
4-alpha-L-fucosyltransferase; Catalyzes the synthesis of Und-PP-GlcNAc-ManNAcA-Fuc4NAc (Lipid III), the third lipid-linked intermediate involved in ECA synthesis; Belongs to the glycosyltransferase 56 family.
  
     0.565
PC1_1998
PFAM: protein of unknown function UPF0259; KEGG: eca:ECA2305 hypothetical protein.
  
     0.552
wecD
TDP-D-fucosamine acetyltransferase; Catalyzes the acetylation of dTDP-fucosamine (dTDP-4-amino- 4,6-dideoxy-D-galactose) to dTDP-Fuc4NAc, which is utilized in the biosynthesis of the enterobacterial common antigen (ECA). Belongs to the WecD family.
  
     0.547
PC1_2539
PFAM: acylphosphatase; KEGG: eca:ECA1761 putative acylphosphatase.
       0.499
PC1_0763
PFAM: protein of unknown function DUF1131; KEGG: eca:ECA0881 hypothetical protein.
  
     0.486
PC1_1045
PFAM: Uncharacterized lipoprotein; KEGG: eca:ECA1145 hypothetical protein.
  
     0.467
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.