STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PC1_3255TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein; KEGG: eca:ECA3445 hypothetical protein. (167 aa)    
Predicted Functional Partners:
PC1_3254
TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877; KEGG: eca:ECA3444 hypothetical protein.
 
 
 0.995
PC1_3248
TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876; KEGG: eca:ECA3438 hypothetical protein.
 
  
 0.982
PC1_3253
TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: GPW/gp25 family protein; KEGG: eca:ECA3443 hypothetical protein.
 
  
 0.980
PC1_3247
TIGRFAM: type IV / VI secretion system protein, DotU family; KEGG: eca:ECA3437 hypothetical protein.
 
  
 0.977
PC1_3252
TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: eca:ECA3442 hypothetical protein.
 
  
 0.974
PC1_3251
TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305; KEGG: eca:ECA3441 hypothetical protein.
 
  
 0.973
PC1_3249
TIGRFAM: type VI secretion lipoprotein, VC_A0113 family; KEGG: eca:ECA3439 putative lipoprotein.
 
  
 0.972
PC1_3250
TIGRFAM: type VI secretion system FHA domain protein; KEGG: eca:ECA3440 hypothetical protein.
 
  
 0.959
PC1_3243
TIGRFAM: type VI secretion-associated protein, VC_A0119 family; PFAM: ImpA domain protein; KEGG: eca:ECA3433 hypothetical protein.
 
  
 0.957
PC1_3242
TIGRFAM: type VI secretion protein IcmF; PFAM: ImcF domain protein; protein of unknown function DUF1215; KEGG: eca:ECA3432 putative virulence-associated protein.
 
  
 0.944
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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