STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
secMSecretion monitor family proten; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family. (171 aa)    
Predicted Functional Partners:
PC1_0033
PFAM: protein of unknown function DUF1375; KEGG: eca:ECA4404 hypothetical protein.
  
     0.774
PC1_0885
KEGG: eca:ECA0979 hypothetical protein.
  
     0.774
PC1_3128
KEGG: eca:ECA3332 hypothetical protein.
  
     0.773
PC1_3892
PFAM: Intracellular growth attenuator IgaA; KEGG: eca:ECA4102 intracellular growth attenuator protein.
  
     0.772
PC1_1914
KEGG: eca:ECA2397 hypothetical protein.
  
     0.771
PC1_2049
PFAM: protein of unknown function DUF1283; KEGG: eca:ECA2253 hypothetical protein; Belongs to the UPF0482 family.
  
     0.771
PC1_2516
KEGG: eca:ECA1784 biofilm formation regulatory protein BssS.
  
     0.770
PC1_0763
PFAM: protein of unknown function DUF1131; KEGG: eca:ECA0881 hypothetical protein.
  
     0.767
PC1_0521
KEGG: eca:ECA0637 hypothetical protein.
  
     0.765
PC1_1167
KEGG: eca:ECA1289 hypothetical protein.
  
     0.765
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.