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secM protein (Pectobacterium carotovorum PC1) - STRING interaction network
"secM" - Secretion monitor in Pectobacterium carotovorum PC1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
secMSecretion monitor; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation (171 aa)    
Predicted Functional Partners:
secA
Protein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane (900 aa)
   
   
  0.823
PC1_3128
KEGG- eca-ECA3332 hypothetical protein (115 aa)
   
          0.756
PC1_0097
PFAM- protein of unknown function DUF1145; KEGG- eca-ECA4348 hypothetical protein (92 aa)
   
          0.756
PC1_4250
PFAM- ATP synthase I chain; KEGG- eca-ECA4519 F0F1 ATP synthase subunit I (127 aa)
   
          0.720
PC1_0960
Transcriptional antiterminator, Rof; PFAM- Modulator of Rho-dependent transcription termination; KEGG- eca-ECA1050 Rho-binding antiterminator (86 aa)
   
          0.705
PC1_3892
PFAM- Intracellular growth attenuator IgaA; KEGG- eca-ECA4102 intracellular growth attenuator protein (715 aa)
   
     
  0.696
PC1_1914
KEGG- eca-ECA2397 hypothetical protein (182 aa)
   
          0.678
PC1_1837
PFAM- DNA polymerase II beta subunit; KEGG- eca-ECA2475 DNA polymerase III subunit theta (76 aa)
   
          0.666
panZ
PanD regulatory factor; Controls both the activation and catalytic activity of PanD in a coenzyme A (CoA)-dependent fashion (148 aa)
   
          0.660
PC1_3767
KEGG- eca-ECA3978 putative lipoprotein (115 aa)
   
          0.648
Your Current Organism:
Pectobacterium carotovorum PC1
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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