STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PC1_3622Xylan 1,4-beta-xylosidase; PFAM: glycoside hydrolase family 43; KEGG: eca:ECA3847 putative xylosidase/arabinosidase; Belongs to the glycosyl hydrolase 43 family. (540 aa)    
Predicted Functional Partners:
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.883
PC1_2125
PFAM: glycoside hydrolase family 28; SMART: Parallel beta-helix repeat; KEGG: aca:ACP_2679 polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
 
 
  0.875
PC1_0989
PFAM: glycoside hydrolase family 28; KEGG: eca:ECA1095 endo-polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
 
 
  0.863
uxaC
PFAM: Glucuronate isomerase; KEGG: eca:ECA0645 glucuronate isomerase.
 
  
 0.847
PC1_3861
KEGG: eca:ECA4070 pectate lyase.
 
   
 0.680
PC1_3047
PFAM: Pectinesterase; KEGG: eca:ECA3253 pectinesterase A.
 
     0.670
PC1_3046
KEGG: eca:ECA3252 pectin acetylesterase.
 
   
 0.648
PC1_0740
Arabinogalactan endo-1,4-beta-galactosidase; PFAM: glycosyl hydrolase 53 domain protein; Ricin B lectin; KEGG: eca:ECA0852 putative exported plant proteoglycan hydrolase.
  
   
 0.623
PC1_0143
KEGG: eca:ECA4303 hypothetical protein.
  
  
 0.541
PC1_2961
PFAM: glycosyl hydrolase 53 domain protein; KEGG: eca:ECA3178 putative arabinogalactan endo-1,4-beta-galactosidase.
  
   
 0.541
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
Server load: medium (74%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.