STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PC1_4039PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: eca:ECA4236 ABC transporter periplasmic binding protein. (318 aa)    
Predicted Functional Partners:
PC1_4036
PFAM: inner-membrane translocator; KEGG: eca:ECA4233 inner membrane ABC transporter permease protein YjfF; Belongs to the binding-protein-dependent transport system permease family.
 0.992
PC1_4037
PFAM: inner-membrane translocator; KEGG: eca:ECA4234 putative ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 0.992
PC1_4038
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA4235 ABC transporter ATP-binding protein.
 
 0.991
PC1_3391
Hpt sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Hpt domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; Hpt domain protein; histidine kinase HAMP region domain protein; KEGG: eca:ECA3571 hybrid sensory histidine kinase BarA.
   
 
 0.789
PC1_2722
PFAM: inner-membrane translocator; KEGG: yen:YE2607 putative membrane permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.771
PC1_2031
PFAM: inner-membrane translocator; KEGG: eca:ECA2271 L-arabinose transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.770
PC1_2721
PFAM: inner-membrane translocator; KEGG: yen:YE2606 putative sugar permease; Belongs to the binding-protein-dependent transport system permease family.
 
 0.762
PC1_4236
PFAM: inner-membrane translocator; KEGG: eca:ECA0012 ribose ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.753
PC1_1339
PFAM: inner-membrane translocator; KEGG: eca:ECA1461 putative sugar ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.752
PC1_1661
PFAM: inner-membrane translocator; KEGG: eca:ECA2720 ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.737
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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