STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PC1_4235PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: eca:ECA0013 D-ribose transporter subunit RbsB. (295 aa)    
Predicted Functional Partners:
PC1_4236
PFAM: inner-membrane translocator; KEGG: eca:ECA0012 ribose ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 0.997
rbsA
ABC transporter related; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
 0.994
rbsD
RbsD or FucU transport; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
 
  
 0.973
PC1_2721
PFAM: inner-membrane translocator; KEGG: yen:YE2606 putative sugar permease; Belongs to the binding-protein-dependent transport system permease family.
 0.972
PC1_2722
PFAM: inner-membrane translocator; KEGG: yen:YE2607 putative membrane permease protein; Belongs to the binding-protein-dependent transport system permease family.
 0.971
PC1_3689
PFAM: inner-membrane translocator; KEGG: spe:Spro_3930 monosaccharide-transporting ATPase; Belongs to the binding-protein-dependent transport system permease family.
 0.964
PC1_2723
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: yen:YE2608 putative sugar transport, ATP-binding protein.
 0.942
PC1_2724
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: yen:YE2609 ABC transporter, substrate binding component.
  
  
 
0.927
PC1_3614
PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: eca:ECA3838 methyl-accepting chemotaxis protein.
    
 0.903
PC1_3688
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: spe:Spro_3929 ABC transporter-related protein.
  
 0.901
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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