STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
l(3)72AbPutative U5 small nuclear ribonucleoprotein helicase. (2073 aa)    
Predicted Functional Partners:
PRPF6
Pre-mRNA-processing factor 6.
   
 0.999
EFTUD2
U5 small nuclear ribonucleoprotein component.
   
 0.999
RSE1
Pre-mRNA-splicing factor RSE1.
   
 
 0.997
Txnl4a
Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family.
    
 0.997
snrpf
Small nuclear ribonucleoprotein F.
   
 0.996
snrpb
Small nuclear ribonucleoprotein-associated protein B.
   
 0.995
snu13
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
    
 0.995
Prpf4
U4/U6 small nuclear ribonucleoprotein Prp4.
   
 0.995
smd1
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
   
 0.995
Prpf31
U4/U6 small nuclear ribonucleoprotein Prp31.
    
 0.995
Your Current Organism:
Grifola frondosa
NCBI taxonomy Id: 5627
Other names: G. frondosa, maitake
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