STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Btus_2872KEGG: min:Minf_1263 ribulose bisphosphate carboxylase small subunit; PFAM: ribulose bisphosphate carboxylase small chain. (143 aa)    
Predicted Functional Partners:
Btus_2871
KEGG: min:Minf_1264 ribulose bisophosphate carboxylase; PFAM: ribulose bisphosphate carboxylase large chain; Ribulose bisphosphate carboxylase, large subunit- like; Belongs to the RuBisCO large chain family.
 
 0.999
Btus_2868
PFAM: phosphoribulokinase/uridine kinase; KEGG: syf:Synpcc7942_0977 phosphoribulokinase.
 
  
 0.966
Btus_2873
TIGRFAM: CbbX protein; PFAM: AAA ATPase central domain protein; KEGG: noc:Noc_0331 AAA ATPase; SMART: AAA ATPase.
 
  
 0.948
pgk-2
KEGG: adg:Adeg_1616 phosphoglycerate kinase; PFAM: phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
 0.929
Btus_2645
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ote:Oter_4195 hydrolase.
    
 0.917
Btus_1385
PFAM: carbonic anhydrase; Carbonic anhydrase, YbcF- related; KEGG: bay:RBAM_031920 YvdA.
    
 
 0.819
Btus_2913
PFAM: carbonic anhydrase; KEGG: rca:Rcas_1333 carbonic anhydrase.
    
 
 0.819
Btus_2866
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: afr:AFE_2158 transcriptional regulator, LysR family.
 
   
 0.684
Btus_1638
KEGG: aac:Aaci_1566 AAA ATPase central domain protein; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase.
 
  
 0.677
Btus_2874
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: aac:Aaci_1778 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
       0.616
Your Current Organism:
Kyrpidia tusciae
NCBI taxonomy Id: 562970
Other names: Bacillus tusciae DSM 2912, K. tusciae DSM 2912, Kyrpidia tusciae DSM 2912, Kyrpidia tusciae NBRC 15312, Kyrpidia tusciae str. DSM 2912, Kyrpidia tusciae strain DSM 2912
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