STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saut_0789PP-loop domain protein; COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control; InterPro IPR011063:IPR018317; KEGG: tdn:Suden_1391 hypothetical protein; PFAM: PP-loop domain protein; Queuosine synthesis-like; SPTR: Q3A6S7 tRNA 2-thiocytidine biosynthesis protein ttcA; PFAM: PP-loop family; Belongs to the TtcA family. (249 aa)    
Predicted Functional Partners:
Saut_0788
Methylthioadenosine nucleosidase; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'- methylthioribose and S-ribosylhomocysteine, respectively. Belongs to the PNP/UDP phosphorylase family. MtnN subfamily.
  
   0.835
Saut_0786
COGs: COG0331 (acyl-carrier-protein) S-malonyltransferase; InterPro IPR014043:IPR004410; KEGG: tdn:Suden_1393 malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; SPTR: A1HN87 Malonyl CoA-acyl carrier protein transacylase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase domain; TIGRFAM: malonyl CoA-acyl carrier protein transacylase.
 
    0.830
Saut_0784
COGs: COG1047 FKBP-type peptidyl-prolyl cis-trans isomerase 2; InterPro IPR001179; KEGG: tdn:Suden_1395 peptidylprolyl isomerase, FKBP-type; PFAM: peptidylprolyl isomerase FKBP-type; SPTR: Q9ZK89 FKBP-type peptidyl-prolyl cis-trans isomerase slyD; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase.
 
     0.828
Saut_0785
InterPro IPR002197:IPR002078; KEGG: tdn:Suden_1394 fis family transcriptional regulator; PFAM: helix-turn-helix Fis-type; PFAM: Bacterial regulatory protein, Fis family.
       0.787
Saut_0787
COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: nam:NAMH_0332 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: Q96YL4 269aa long hypothetical glutamine-dependent NAD(+) synthetase; PFAM: Carbon-nitrogen hydrolase.
       0.787
Saut_1445
Sulfur carrier protein ThiS; InterPro IPR003749:IPR010035; KEGG: tdn:Suden_0838 ThiS, thiamine-biosynthesis; PFAM: thiamineS protein; SPTR: A1HPQ7 Thiamine biosynthesis protein ThiS; TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: ThiS family; TIGRFAM: thiamine biosynthesis protein ThiS.
  
   0.717
pal
OmpA/MotB domain protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
   
   0.643
Saut_0783
Tetratricopeptide TPR_2 repeat protein; COGs: COG1729 conserved hypothetical protein; InterPro IPR001440:IPR013105:IPR019734:IPR013026; KEGG: tdn:Suden_1396 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: P45955 Uncharacterized protein ybgF.
       0.626
Saut_0778
MotA/TolQ/ExbB proton channel; COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: tdn:Suden_1401 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel; SPTR: O25755 Putative biopolymer transport protein exbB-like 1; PFAM: MotA/TolQ/ExbB proton channel family.
 
    0.566
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
     
 0.543
Your Current Organism:
Sulfurimonas autotrophica
NCBI taxonomy Id: 563040
Other names: S. autotrophica DSM 16294, Sulfurimonas autotrophica DSM 16294, Sulfurimonas autotrophica OK10, Sulfurimonas autotrophica str. DSM 16294, Sulfurimonas autotrophica strain DSM 16294
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