STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saut_1925InterPro IPR010432; KEGG: tdn:Suden_1918 RDD protein; PFAM: RDD domain containing protein; SPTR: A3GUL7 RDD family, putative; PFAM: RDD family. (153 aa)    
Predicted Functional Partners:
Saut_0742
Conserved hypothetical protein; COGs: COG2404 phosphohydrolase (DHH superfamily); KEGG: tdn:Suden_0723 hypothetical protein; SPTR: A3ID49 YngD.
  
     0.766
Saut_1797
COGs: COG4105 DNA uptake lipoprotein; KEGG: tdn:Suden_0413 DNA uptake lipoprotein-like; TIGRFAM: outer membrane assembly lipoprotein YfiO.
  
     0.748
Saut_1608
Transformation system protein; COGs: COG1040 amidophosphoribosyltransferase; InterPro IPR002375; KEGG: tdn:Suden_1638 transformation system protein; PFAM: Phosphoribosyl transferase domain.
 
     0.747
Saut_1667
KEGG: tdn:Suden_0525 hypothetical protein.
  
   0.735
Saut_1967
Protein of unknown function DUF507; COGs: COG2952 conserved hypothetical protein; InterPro IPR007463; KEGG: tdn:Suden_0079 hypothetical protein; PFAM: protein of unknown function DUF507; PFAM: Protein of unknown function (DUF507).
  
     0.709
Saut_1604
COGs: COG1466 DNA polymerase III delta subunit; InterPro IPR010372; KEGG: tdn:Suden_0542 DNA polymerase III subunit delta; PFAM: DNA polymerase III delta; SPTR: Q9ZJY0 Protein jhp_1168; PFAM: DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit.
 
     0.659
Saut_1926
COGs: COG2857 Cytochrome c1; InterPro IPR009056; KEGG: tdn:Suden_1919 ubiquinol cytochrome c oxidoreductase, cytochrome c1 subunit; SPTR: A0JCI3 Ubiquinol cytochrome c oxidoreductase, cytochrome c1 subunit; PFAM: Cytochrome c; Cytochrome C1 family.
  
     0.658
mqnA
Protein of unknown function DUF178; Catalyzes the dehydration of chorismate into 3-[(1- carboxyvinyl)oxy]benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2).
  
     0.639
Saut_1108
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
  
     0.639
Saut_1570
Cytochrome c-553; InterPro IPR009056; KEGG: tdn:Suden_0578 cytochrome c-553; SPTR: Q9ZJZ9 Cytochrome c-553.
  
     0.639
Your Current Organism:
Sulfurimonas autotrophica
NCBI taxonomy Id: 563040
Other names: S. autotrophica DSM 16294, Sulfurimonas autotrophica DSM 16294, Sulfurimonas autotrophica OK10, Sulfurimonas autotrophica str. DSM 16294, Sulfurimonas autotrophica strain DSM 16294
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.