STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL11507.1S-formylglutathione hydrolase FrmB. (272 aa)    
Predicted Functional Partners:
SDM06844.1
Ferredoxin-nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
    
  0.599
SDL82335.1
Diacylglycerol kinase family enzyme.
  
  
  0.572
SDM07183.1
NADH dehydrogenase subunit E.
    
 0.553
SDL11465.1
RNA polymerase sigma-70 factor, ECF subfamily.
       0.547
SDM07205.1
NADH dehydrogenase subunit F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.
    
  0.537
SDL11534.1
Phosphonoacetate hydrolase.
       0.528
SDL46722.1
Glutamate synthase (NADH) small subunit.
   
 
  0.514
SDL28974.1
Enterochelin esterase.
  
 
0.513
SDM27750.1
Enterochelin esterase.
 
  
  0.482
SDL11348.1
Starch-binding associating with outer membrane.
 
     0.481
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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