STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL13376.1Hypothetical protein. (531 aa)    
Predicted Functional Partners:
SDL13355.1
Membrane fusion protein, multidrug efflux system.
 
   0.958
SDL13328.1
Outer membrane protein TolC.
 
    0.844
SDL46863.1
Membrane fusion protein, multidrug efflux system.
 
   0.821
SDM59084.1
Membrane fusion protein, multidrug efflux system.
 
   0.805
SDL13410.1
DNA-binding transcriptional regulator, MarR family.
       0.773
SDL46893.1
Outer membrane protein TolC.
 
    0.593
SDM06844.1
Ferredoxin-nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
     
 0.551
SDM71958.1
Quinol:cytochrome c oxidoreductase iron-sulfur protein precursor.
     
 0.551
SDL13301.1
DNA-binding transcriptional regulator, MarR family.
       0.544
SDL57153.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
  0.518
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.