STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL17390.1Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain. (326 aa)    
Predicted Functional Partners:
SDN06212.1
AraC-type DNA-binding protein.
  
   0.601
SDM25131.1
RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
   
 
 0.586
SDL17420.1
PhnB protein; Manually curated.
  
    0.575
SDL17445.1
PhnB protein.
  
    0.575
SDL96991.1
AraC-like ligand binding domain-containing protein.
 
 
 0.551
SDM58049.1
Transcriptional regulator, AraC family.
  
   0.538
SDM22831.1
AraC-type DNA-binding protein; Non-canonical start codon; manually curated.
  
   0.477
SDL12997.1
Transcriptional regulator, AraC family.
  
   0.454
SDM58738.1
Uncharacterized conserved protein PhnB, glyoxalase superfamily.
 
    0.447
SDL22174.1
Hypothetical protein.
 
     0.409
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.