STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL86252.1TonB-linked outer membrane protein, SusC/RagA family. (1201 aa)    
Predicted Functional Partners:
SDL86283.1
Starch-binding associating with outer membrane.
 
     0.928
SDL61011.1
Starch-binding associating with outer membrane.
  
     0.751
SDM37570.1
Heparinase II/III-like protein.
  
     0.747
SDL20591.1
Starch-binding associating with outer membrane.
  
     0.741
SDL14970.1
Starch-binding associating with outer membrane.
  
     0.736
SDM18843.1
Starch-binding associating with outer membrane.
  
     0.715
SDL12497.1
Starch-binding associating with outer membrane.
  
     0.701
SDM20337.1
Starch-binding associating with outer membrane.
  
     0.701
SDL22967.1
Starch-binding associating with outer membrane.
  
     0.682
SDL86556.1
Starch-binding associating with outer membrane.
  
     0.679
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.