STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL86763.1Two component transcriptional regulator, LuxR family. (217 aa)    
Predicted Functional Partners:
SDL57807.1
PAS domain S-box-containing protein.
  
 0.993
SDL56587.1
Signal transduction histidine kinase.
  
 0.981
SDM18055.1
PAS domain S-box-containing protein.
 
 0.979
SDL86690.1
Signal transduction histidine kinase.
 
   0.971
SDL24069.1
His Kinase A (phospho-acceptor) domain-containing protein.
  
 0.963
SDL49057.1
Tetratricopeptide repeat-containing protein.
  
 0.930
SDM24151.1
Signal transduction histidine kinase.
 
 0.915
SDL12273.1
Signal transduction histidine kinase.
   
 0.894
SDM40942.1
Signal transduction histidine kinase.
 
  0.863
SDM06694.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
   0.857
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.