STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM22305.1Outer membrane receptor proteins, mostly Fe transport. (795 aa)    
Predicted Functional Partners:
SDM08451.1
Ketosteroid isomerase homolog.
  
     0.577
SDN06973.1
Iron complex outermembrane recepter protein.
  
    0.546
SDL86940.1
TonB family C-terminal domain-containing protein.
  
   0.542
SDM22364.1
Two component transcriptional regulator, LytTR family.
 
     0.539
SDM22448.1
Y_Y_Y domain-containing protein.
 
     0.506
SDM90688.1
Beta-barrel assembly machine subunit BamD.
  
     0.491
SDM04649.1
Hypothetical protein.
  
     0.479
SDM22336.1
Histidine kinase.
       0.479
SDM97013.1
Hypothetical protein.
   
   0.476
SDL12472.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.471
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.