STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM24984.1TolA-binding protein. (1002 aa)    
Predicted Functional Partners:
SDM24953.1
Hypothetical protein.
 
     0.924
SDM69716.1
WD40-like Beta Propeller Repeat.
 
  
 0.915
SDM23731.1
WD40-like Beta Propeller Repeat.
 
  
 0.843
SDM24901.1
Hypothetical protein.
 
   
 0.824
SDN06788.1
WD40-like Beta Propeller Repeat.
 
  
 0.819
SDM56145.1
Biopolymer transport protein ExbD.
 
  
 0.776
SDM56166.1
Outer membrane transport energization protein ExbB.
 
  
 0.740
SDL77585.1
Gliding motility-associated lipoprotein GldJ/gliding motility-associated lipoprotein GldJ,TIGR03530.
  
    0.724
SDM71790.1
Hypothetical protein.
  
     0.720
SDM24264.1
Tetratricopeptide repeat-containing protein.
 
  
 0.706
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.