STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM39680.1ABC-type multidrug transport system, ATPase component. (297 aa)    
Predicted Functional Partners:
SDM39589.1
ABC-2 type transport system permease protein.
 
 0.997
SDM39618.1
ABC-2 type transport system permease protein.
 
 0.997
SDM39719.1
HlyD family secretion protein.
 
    0.956
SDM39754.1
Transcriptional regulator, TetR family.
 
     0.935
SDM39646.1
ABC-2 type transport system ATP-binding protein.
 
    
0.833
SDL15171.1
Peptidase family M1.
  
 0.824
SDM20857.1
ABC-2 type transport system permease protein.
 
 0.729
SDL85005.1
ABC-2 type transport system permease protein.
 
 0.728
SDL61745.1
ABC-type lipoprotein export system, ATPase component.
 
    
0.686
atpD
ATP synthase F1 subcomplex beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 
 0.664
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.