STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM43708.1YD repeat-containing protein. (2248 aa)    
Predicted Functional Partners:
SDM43734.1
RHS repeat-associated core domain-containing protein.
 
     0.904
SDL40554.1
RHS repeat-associated core domain-containing protein.
 
     0.779
SDL70600.1
Protein of unknown function.
  
 
 0.570
SDM91502.1
Protein of unknown function.
   
 
 0.496
SDM43173.1
Hypothetical protein.
  
     0.462
SDM08330.1
PAP2 superfamily protein.
  
 
  0.422
SDL40657.1
PAP2 superfamily protein.
  
 
  0.421
SDL30454.1
Hypothetical protein.
  
     0.419
SDL43970.1
Transcriptional regulator, AraC family.
  
     0.412
SDM43680.1
Por secretion system C-terminal sorting domain-containing protein.
       0.408
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.