STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM78103.1LytTr DNA-binding domain-containing protein. (235 aa)    
Predicted Functional Partners:
SDM78136.1
Hypothetical protein.
       0.526
SDM78781.1
Hypothetical protein.
  
     0.513
SDL54170.1
Ligand-binding sensor domain-containing protein.
   
 
  0.500
SDM19057.1
Hypothetical protein.
  
     0.496
SDN08992.1
Calcineurin-like phosphoesterase.
  
     0.467
SDM78738.1
Hypothetical protein.
  
     0.463
SDL74854.1
Predicted metal-dependent phosphohydrolase, HD superfamily.
  
     0.440
SDL12273.1
Signal transduction histidine kinase.
     
 0.431
SDL21968.1
Thioredoxin-like.
  
     0.429
SDM38423.1
Sulfur carrier protein.
  
     0.426
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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