STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM87580.1Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid). (389 aa)    
Predicted Functional Partners:
SDM87527.1
Chromosome partitioning ATPase, Mrp family, contains Fe-S cluster.
 
 
 0.990
SDM67738.1
Capsular exopolysaccharide family.
 
 
 0.968
SDM68031.1
Polymer biosynthesis protein, WecB/TagA/CpsF family; Belongs to the glycosyltransferase 26 family.
  
 0.939
SDM87499.1
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase.
 
  
 0.879
SDM87438.1
O-antigen ligase like membrane protein.
 
  
 0.875
SDM87557.1
Outer membrane efflux protein.
       0.774
SDM87665.1
Glycosyltransferase involved in cell wall bisynthesis.
 
    0.772
SDM87603.1
Response regulator receiver domain-containing protein; Manually curated.
 
     0.767
SDM87359.1
Hypothetical protein.
 
 
 0.744
SDM87280.1
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase.
   
 0.732
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.