STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN03842.1DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (260 aa)    
Predicted Functional Partners:
SDL57807.1
PAS domain S-box-containing protein.
 
 0.999
SDL56587.1
Signal transduction histidine kinase.
 
0.994
SDM18055.1
PAS domain S-box-containing protein.
 
 0.993
SDN03868.1
Signal transduction histidine kinase.
 
  0.982
SDM24151.1
Signal transduction histidine kinase.
 0.957
SDL24069.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
 0.947
SDM37334.1
Signal transduction histidine kinase.
 
  0.924
SDL14369.1
PAS domain S-box-containing protein.
 0.899
SDL99784.1
Signal transduction histidine kinase.
  
   0.851
SDL61662.1
Signal transduction histidine kinase.
 
  0.840
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.