STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX69899.1Hypothetical protein. (116 aa)    
Predicted Functional Partners:
SDX69870.1
TIGR02217 family protein.
       0.773
SDX69845.1
Phage tail tape measure protein, lambda family.
       0.591
SDX69960.1
Lysozyme.
       0.499
SDX69987.1
Hypothetical protein.
       0.491
SDX70013.1
Phage conserved hypothetical protein BR0599.
       0.491
SDX70049.1
Putative phage cell wall peptidase, NlpC/P60 family.
       0.491
SDX70078.1
Putative phage tail protein.
       0.485
SDX70112.1
Protein of unknown function.
       0.473
SDX69807.1
Transposase.
       0.438
Your Current Organism:
Roseicitreum antarcticum
NCBI taxonomy Id: 564137
Other names: CGMCC 1.8894, LMG 24863, LMG:24863, R. antarcticum, Rhodobacter sp. ZS2-28, Roseicitreum antarcticum Yu et al. 2011, strain ZS2-28
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.