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rpe protein (Brachyspira hyodysenteriae) - STRING interaction network
"rpe" - Ribulose-phosphate 3-epimerase in Brachyspira hyodysenteriae
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpeRibulose-phosphate 3-epimerase (233 aa)    
Predicted Functional Partners:
tkt
Transketolase N-terminal subunit (265 aa)
   
  0.998
tkt'
Transketolase, pyridine binding subunit (305 aa)
 
   
  0.991
BHWA1_01037
Ribose-5-phosphate isomerase B (168 aa)
       
  0.991
BHWA1_02057
Xylulose kinase (505 aa)
 
   
  0.938
BHWA1_00789
Xylulose kinase (517 aa)
       
  0.929
kdgK
2-keto-3-deoxygluconate kinase (348 aa)
   
  0.881
thrS
threonyl-tRNA synthetase (643 aa)
   
    0.848
BHWA1_01064
Ribosome-associated GTPase; May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover (367 aa)
            0.830
pgk
Phosphoglycerate kinase (411 aa)
 
 
  0.804
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate (355 aa)
         
  0.801
Your Current Organism:
Brachyspira hyodysenteriae
NCBI taxonomy Id: 565034
Other names: B. hyodysenteriae, B. hyodysenteriae WA1, Brachyspira hyodysenteriae, Brachyspira hyodysenteriae WA1, Brachyspira hyodysenteriae str. WA1, Brachyspira hyodysenteriae strain WA1, Serpula hyodysenteriae, Serpulina hyodysenteriae, Treponema hyodysenteriae
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