STRINGSTRING
rodA protein (Brachyspira hyodysenteriae) - STRING interaction network
"rodA" - annotation not available in Brachyspira hyodysenteriae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rodAannotation not available (438 aa)    
Predicted Functional Partners:
pbp1
annotation not available (669 aa)
 
  0.990
mreB
annotation not available (334 aa)
 
 
  0.924
spoIIE
annotation not available (383 aa)
 
   
  0.906
mreC
Cell shape-determining protein MreC; Involved in formation and maintenance of cell shape (273 aa)
 
 
  0.856
pbp3
annotation not available (634 aa)
 
  0.844
murD
UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA); Belongs to the MurCDEF family (471 aa)
   
  0.777
ACN84049.1
annotation not available (790 aa)
 
 
  0.752
pbpB
annotation not available (870 aa)
 
 
  0.750
murfF
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein (450 aa)
 
  0.693
ACN83414.1
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation (301 aa)
 
 
  0.651
Your Current Organism:
Brachyspira hyodysenteriae
NCBI taxonomy Id: 565034
Other names: B. hyodysenteriae WA1, Brachyspira hyodysenteriae, Brachyspira hyodysenteriae WA1, Brachyspira hyodysenteriae str. WA1, Brachyspira hyodysenteriae strain WA1
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