STRINGSTRING
spoIIE protein (Brachyspira hyodysenteriae) - STRING interaction network
"spoIIE" - Stage II sporulation protein E in Brachyspira hyodysenteriae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoIIEStage II sporulation protein E (383 aa)    
Predicted Functional Partners:
pbp1
Peptidoglycan synthesis transpeptidase (669 aa)
 
 
 
  0.963
BHWA1_02187
Anti-sigma factor antagonist (111 aa)
 
 
  0.954
BHWA1_01271
Hypothetical protein (798 aa)
 
  0.933
rodA
Rod shape-determining protein RodA (438 aa)
 
     
  0.924
BHWA1_01543
Histidine kinase (516 aa)
  0.921
BHWA1_00930
Signal transduction histidine kinase (579 aa)
  0.893
BHWA1_00306
GGDEF domain-containing protein (331 aa)
  0.878
BHWA1_00269
Sensory box histidine kinase (393 aa)
  0.878
BHWA1_00850
GGDEF domain-containing protein (275 aa)
  0.877
BHWA1_01334
Chemotaxis protein methyltransferase CheR (271 aa)
   
  0.838
Your Current Organism:
Brachyspira hyodysenteriae
NCBI taxonomy Id: 565034
Other names: B. hyodysenteriae, B. hyodysenteriae WA1, Brachyspira hyodysenteriae, Brachyspira hyodysenteriae WA1, Brachyspira hyodysenteriae str. WA1, Brachyspira hyodysenteriae strain WA1, Serpula hyodysenteriae, Serpulina hyodysenteriae, Treponema hyodysenteriae
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