STRINGSTRING
nifU protein (Brachyspira hyodysenteriae) - STRING interaction network
"nifU" - Nitrogen fixation protein NifU in Brachyspira hyodysenteriae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nifUNitrogen fixation protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (277 aa)    
Predicted Functional Partners:
nifS
Cysteine desulfurase; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine (388 aa)
 
 
  0.999
sodA
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (194 aa)
 
 
  0.962
ACN84066.1
annotation not available (69 aa)
   
 
  0.938
dnaK
Chaperone protein DnaK; Acts as a chaperone (622 aa)
 
 
  0.905
ACN84928.1
annotation not available (371 aa)
   
 
  0.849
trmU
tRNA-specific 2-thiouridylase MnmA; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 (352 aa)
       
  0.816
ACN82668.1
annotation not available (552 aa)
   
   
  0.779
ACN83959.1
annotation not available (316 aa)
   
   
  0.772
ACN84923.1
annotation not available (146 aa)
   
   
  0.771
ACN82651.1
annotation not available (115 aa)
   
   
  0.771
Your Current Organism:
Brachyspira hyodysenteriae
NCBI taxonomy Id: 565034
Other names: B. hyodysenteriae WA1, Brachyspira hyodysenteriae, Brachyspira hyodysenteriae WA1, Brachyspira hyodysenteriae str. WA1, Brachyspira hyodysenteriae strain WA1
Server load: low (15%) [HD]