STRINGSTRING
tmpB protein (Brachyspira hyodysenteriae) - STRING interaction network
"tmpB" - Outer membrane protein in Brachyspira hyodysenteriae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmpBOuter membrane protein (472 aa)    
Predicted Functional Partners:
BHWA1_00239
cAMP-binding protein (400 aa)
   
          0.775
BHWA1_02646
cAMP-binding protein (394 aa)
   
          0.774
BHWA1_02233
Fe-S oxidoreductase (479 aa)
   
          0.772
BHWA1_00245
cAMP-binding protein (395 aa)
   
          0.771
BHWA1_00795
Fibronectin type III domain-containing protein (472 aa)
   
          0.765
BHWA1_01498
Hypothetical protein (565 aa)
   
          0.760
BHWA1_01526
Hypothetical protein (598 aa)
   
          0.758
BHWA1_02337
Flagellar filament outer layer protein FlaA (241 aa)
   
          0.755
BHWA1_00103
Hypothetical protein (265 aa)
   
          0.745
BHWA1_00453
Hypothetical protein (7854 aa)
   
          0.737
Your Current Organism:
Brachyspira hyodysenteriae
NCBI taxonomy Id: 565034
Other names: B. hyodysenteriae, B. hyodysenteriae WA1, Brachyspira hyodysenteriae, Brachyspira hyodysenteriae WA1, Brachyspira hyodysenteriae str. WA1, Brachyspira hyodysenteriae strain WA1, Serpula hyodysenteriae, Serpulina hyodysenteriae, Treponema hyodysenteriae
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