STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ompA-3Outer membrane protein. (203 aa)    
Predicted Functional Partners:
ompA-2
OmpA family protein.
 
    
0.767
ACN82650.1
Lytic transglycosylase, catalytic.
 
 
 
 0.732
ACN83137.1
Hypothetical protein.
  
 
 0.732
treP
Trep.
  
 
 0.732
ACN83851.1
Outer membrane chaperone Skp (OmpH).
  
 
 0.697
rspF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
 
   0.694
lepB-3
Leader peptidase (signal peptidase I); Belongs to the peptidase S26 family.
 
  
 0.618
ACN84086.1
TPR domain-containing protein.
   
 
 0.549
ompA
Outer membrane protein OmpA family.
  
 
 0.534
rpsL
30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
   
 
 0.534
Your Current Organism:
Brachyspira hyodysenteriae
NCBI taxonomy Id: 565034
Other names: B. hyodysenteriae WA1, Brachyspira hyodysenteriae WA1, Brachyspira hyodysenteriae str. WA1, Brachyspira hyodysenteriae strain WA1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.