STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LMJF_29_0920Letm1 RBD domain-containing protein. (501 aa)    
Predicted Functional Partners:
LmjF36.5010
40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.
   
   0.710
LMJF_19_0390
Putative 40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.
   
   0.705
LMJF_28_1010
Putative ribosomal protein S20.
    
   0.704
RPL11
60S ribosomal protein L11; Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. The small ribosomal subunit (SSU) binds messenger RNAs (mRNAs) and translates the encoded message by selecting cognate aminoacyl-transfer RNA (tRNA) molecules. The large subunit (LSU) contains the ribosomal catalytic site termed the peptidyl transferase center (PTC), which catalyzes the formation of peptide bonds, thereby polymerizing the amino acids delivered by tRNAs into a polypeptide chain. The nascent polypeptides leave the ribosome through [...]
    
   0.702
LMJF_11_1190
Putative 40S ribosomal protein S15A; Belongs to the universal ribosomal protein uS8 family.
    
   0.702
LMJF_01_0410
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
    
 
 0.485
LMJF_32_3900
Putative 60S ribosomal protein L2.
    
 
 0.482
LMJF_32_0450
40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
    
 
 0.471
LMJF_19_0060
40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
    
 
 0.471
LMJF_26_2420
MATH domain-containing protein.
    
 0.462
Your Current Organism:
Leishmania major
NCBI taxonomy Id: 5664
Other names: L. major, Leishmania (Leishmania) major, Leishmania tropica major
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.