LMJF_35_1660 protein (Leishmania major) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LMJF_35_1660

Mismatch repair protein. (840 aa)

Predicted Functional Partners:

LMJF_24_1420

0.999

LMJF_36_1950

0.991

LMJF_33_0410

0.984

LMJF_23_1270

0.967

LMJF_21_0885

0.944

LMJF_15_1420

0.929

LMJF_15_1450

0.909

msh5

0.869

LMJF_17_0660

0.785

LMJF_22_0070

0.767

Your Current Organism:

Leishmania major

NCBI taxonomy Id: 5664
Other names: L. major, Leishmania (Leishmania) major, Leishmania tropica major

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LMJF_15_1420	LMJF_15_1450	Q4QF38	Q4QF35	Putative mismatch repair protein MSH3.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.941
LMJF_15_1420	LMJF_17_0660	Q4QF38	Q4QEC0	Putative mismatch repair protein MSH3.	Uncharacterized protein.	0.872
LMJF_15_1420	LMJF_21_0885	Q4QF38	Q4QCB1	Putative mismatch repair protein MSH3.	Putative mis-match repair protein.	0.960
LMJF_15_1420	LMJF_22_0070	Q4QF38	Q4QBY7	Putative mismatch repair protein MSH3.	Uncharacterized protein.	0.634
LMJF_15_1420	LMJF_23_1270	Q4QF38	Q4QB25	Putative mismatch repair protein MSH3.	Uncharacterized protein.	0.760
LMJF_15_1420	LMJF_24_1420	Q4QF38	Q4QAI9	Putative mismatch repair protein MSH3.	Putative mismatch repair protein.	0.939
LMJF_15_1420	LMJF_33_0410	Q4QF38	Q4Q4J6	Putative mismatch repair protein MSH3.	Putative DNA mismatch repair protein.	0.968
LMJF_15_1420	LMJF_35_1660	Q4QF38	E9AEY8	Putative mismatch repair protein MSH3.	Mismatch repair protein.	0.929
LMJF_15_1420	LMJF_36_1950	Q4QF38	Q4Q1M8	Putative mismatch repair protein MSH3.	Putative mismatch repair protein MSH8.	0.965
LMJF_15_1450	LMJF_15_1420	Q4QF35	Q4QF38	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Putative mismatch repair protein MSH3.	0.941
LMJF_15_1450	LMJF_17_0660	Q4QF35	Q4QEC0	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Uncharacterized protein.	0.799
LMJF_15_1450	LMJF_21_0885	Q4QF35	Q4QCB1	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Putative mis-match repair protein.	0.935
LMJF_15_1450	LMJF_23_1270	Q4QF35	Q4QB25	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Uncharacterized protein.	0.971
LMJF_15_1450	LMJF_24_1420	Q4QF35	Q4QAI9	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Putative mismatch repair protein.	0.920
LMJF_15_1450	LMJF_33_0410	Q4QF35	Q4Q4J6	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Putative DNA mismatch repair protein.	0.935
LMJF_15_1450	LMJF_35_1660	Q4QF35	E9AEY8	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Mismatch repair protein.	0.909
LMJF_15_1450	LMJF_36_1950	Q4QF35	Q4Q1M8	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Putative mismatch repair protein MSH8.	0.999
LMJF_15_1450	msh5	Q4QF35	Q4FXN1	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	MutS-like protein.	0.849
LMJF_17_0660	LMJF_15_1420	Q4QEC0	Q4QF38	Uncharacterized protein.	Putative mismatch repair protein MSH3.	0.872
LMJF_17_0660	LMJF_15_1450	Q4QEC0	Q4QF35	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.799