STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LMJF_33_0100Uncharacterized protein. (330 aa)    
Predicted Functional Partners:
LMJF_19_1390
Transcription initiation factor-like protein (TFIID-like protein).
   
 0.750
LMJF_35_4660
Putative small nuclear RNA gene activation protein (SNAP) 50.
   
 
  0.704
LMJF_18_0470
WD_REPEATS_REGION domain-containing protein.
    
  0.703
LMJF_34_0360
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.605
LMJF_19_0420
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
     
 0.603
LMJF_26_1110
Uncharacterized protein.
   
  0.579
LMJF_26_0650
Uncharacterized protein.
   
 0.487
LMJF_16_1350
Putative DNA-directed rna polymerase I largest subunit.
    
  0.480
LMJF_34_0890
Putative DNA-directed RNA polymerase subunit.
     
 0.448
LMJF_25_0140
Uncharacterized protein.
     
 0.448
Your Current Organism:
Leishmania major
NCBI taxonomy Id: 5664
Other names: L. major, Leishmania (Leishmania) major, Leishmania tropica major
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