LMJF_32_1250 protein (Leishmania major) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LMJF_32_1250

Putative ubiquitin hydrolase; Belongs to the peptidase C19 family. (409 aa)

Predicted Functional Partners:

LMJF_29_2300

0.831

LMJF_15_1450

0.699

LMJF_36_0600

0.555

LMJF_14_1270

0.555

LMJF_27_2140

0.553

LMJF_36_3530

0.553

LMJF_34_2125

0.553

LMJF_09_0240

0.533

LMJF_06_0300

0.533

L1648.03

0.533

Your Current Organism:

Leishmania major

NCBI taxonomy Id: 5664
Other names: L. major, Leishmania (Leishmania) major, Leishmania tropica major

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
L1648.03	LMJF_14_1270	Q9U1E5	Q4QFK7	Putative ubiquitin carboxy-terminal hydrolase; Belongs to the peptidase C19 family.	Putative ubiquitin/ribosomal protein S27a.	0.463
L1648.03	LMJF_15_1450	Q9U1E5	Q4QF35	Putative ubiquitin carboxy-terminal hydrolase; Belongs to the peptidase C19 family.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.624
L1648.03	LMJF_27_2140	Q9U1E5	E9ADJ4	Putative ubiquitin carboxy-terminal hydrolase; Belongs to the peptidase C19 family.	PI3K/PI4K domain-containing protein.	0.467
L1648.03	LMJF_32_1250	Q9U1E5	Q4Q5F7	Putative ubiquitin carboxy-terminal hydrolase; Belongs to the peptidase C19 family.	Putative ubiquitin hydrolase; Belongs to the peptidase C19 family.	0.533
L1648.03	LMJF_34_2125	Q9U1E5	Q4Q2Y8	Putative ubiquitin carboxy-terminal hydrolase; Belongs to the peptidase C19 family.	Ubiquitin-like protein.	0.467
L1648.03	LMJF_36_0600	Q9U1E5	Q4Q216	Putative ubiquitin carboxy-terminal hydrolase; Belongs to the peptidase C19 family.	Putative ubiquitin/ribosomal protein S27a.	0.463
L1648.03	LMJF_36_3530	Q9U1E5	Q4Q165	Putative ubiquitin carboxy-terminal hydrolase; Belongs to the peptidase C19 family.	Putative polyubiquitin.	0.467
LMJF_06_0300	LMJF_14_1270	Q4QJ49	Q4QFK7	MYND finger domain-like protein.	Putative ubiquitin/ribosomal protein S27a.	0.463
LMJF_06_0300	LMJF_15_1450	Q4QJ49	Q4QF35	MYND finger domain-like protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.624
LMJF_06_0300	LMJF_27_2140	Q4QJ49	E9ADJ4	MYND finger domain-like protein.	PI3K/PI4K domain-containing protein.	0.467
LMJF_06_0300	LMJF_32_1250	Q4QJ49	Q4Q5F7	MYND finger domain-like protein.	Putative ubiquitin hydrolase; Belongs to the peptidase C19 family.	0.533
LMJF_06_0300	LMJF_34_2125	Q4QJ49	Q4Q2Y8	MYND finger domain-like protein.	Ubiquitin-like protein.	0.467
LMJF_06_0300	LMJF_36_0600	Q4QJ49	Q4Q216	MYND finger domain-like protein.	Putative ubiquitin/ribosomal protein S27a.	0.463
LMJF_06_0300	LMJF_36_3530	Q4QJ49	Q4Q165	MYND finger domain-like protein.	Putative polyubiquitin.	0.467
LMJF_09_0240	LMJF_14_1270	Q4QI02	Q4QFK7	Putative ubiqitin hydrolase; Belongs to the peptidase C19 family.	Putative ubiquitin/ribosomal protein S27a.	0.463
LMJF_09_0240	LMJF_15_1450	Q4QI02	Q4QF35	Putative ubiqitin hydrolase; Belongs to the peptidase C19 family.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.624
LMJF_09_0240	LMJF_27_2140	Q4QI02	E9ADJ4	Putative ubiqitin hydrolase; Belongs to the peptidase C19 family.	PI3K/PI4K domain-containing protein.	0.467
LMJF_09_0240	LMJF_32_1250	Q4QI02	Q4Q5F7	Putative ubiqitin hydrolase; Belongs to the peptidase C19 family.	Putative ubiquitin hydrolase; Belongs to the peptidase C19 family.	0.533
LMJF_09_0240	LMJF_34_2125	Q4QI02	Q4Q2Y8	Putative ubiqitin hydrolase; Belongs to the peptidase C19 family.	Ubiquitin-like protein.	0.467
LMJF_09_0240	LMJF_36_0600	Q4QI02	Q4Q216	Putative ubiqitin hydrolase; Belongs to the peptidase C19 family.	Putative ubiquitin/ribosomal protein S27a.	0.463