STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LMJF_07_0340Putative ATP-dependent DEAD/H RNA helicase. (592 aa)    
Predicted Functional Partners:
LMJF_28_2080
Putative mitochondrial DEAD box protein; Belongs to the DEAD box helicase family.
  
  
 
0.913
LmjF22.0030
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
 0.758
LMJF_35_1820
Uncharacterized protein.
   
 0.678
LMJF_36_3000
Putative ATP-dependent RNA helicase.
   
 0.659
LMJF_33_2400
Putative ras-like small GTPases.
  
 0.659
LMJF_28_2570
Putative splicing factor 3B subunit 1.
   
 0.628
LmjF11.0410
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
 0.628
LMJF_28_1530
Putative ATP dependent DEAD-box helicase; Belongs to the DEAD box helicase family.
  
0.616
LMJF_15_1380
Putative nucleolar RNA binding protein.
  
 
 0.615
LMJF_31_0200
WD_REPEATS_REGION domain-containing protein.
   
 0.602
Your Current Organism:
Leishmania major
NCBI taxonomy Id: 5664
Other names: L. major, Leishmania (Leishmania) major, Leishmania tropica major
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.