STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LMJF_06_0770RNA-binding protein-like protein. (2008 aa)    
Predicted Functional Partners:
LmjF.01.0770
Probable eukaryotic initiation factor 4A; ATP-dependent RNA helicase which is a subunit of the eIF4F complex involved in cap recognition and is required for mRNA binding to ribosome. In the current model of translation initiation, eIF4A unwinds RNA secondary structures in the 5'-UTR of mRNAs which is necessary to allow efficient binding of the small ribosomal subunit, and subsequent scanning for the initiator codon (By similarity).
   
 0.676
LMJF_30_0540
Nuclear cap-binding protein subunit 2.
   
 0.624
LMJF_32_0720
Pan3_PK domain-containing protein.
    
 0.589
LMJF_30_0250
Putative ubiquitin hydrolase.
    
 0.573
LMJF_35_3370
Uncharacterized protein.
   
 0.572
LmjF.35.0400
40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.
   
 0.563
LMJF_28_1530
Putative ATP dependent DEAD-box helicase; Belongs to the DEAD box helicase family.
   
 0.522
LMJF_10_1110
LsmAD domain-containing protein.
   
 
 0.522
LMJF_17_0010
Uncharacterized protein.
   
 
 0.516
LMJF_11_1170
Putative eukaryotic release factor 3.
   
 0.496
Your Current Organism:
Leishmania major
NCBI taxonomy Id: 5664
Other names: L. major, Leishmania (Leishmania) major, Leishmania tropica major
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