STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A5630_29600Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. (183 aa)    
Predicted Functional Partners:
A5630_29595
Unannotated protein.
   
 
 0.875
A5630_25845
Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.838
A5630_12775
Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
  
0.829
A5630_19365
Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.763
A5630_11195
Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.751
A5630_09385
Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.750
A5630_21720
Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.741
rpoC
Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.692
rpoB
Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.670
A5630_29590
Unannotated protein.
     
 0.661
Your Current Organism:
Mycolicibacterium mucogenicum
NCBI taxonomy Id: 56689
Other names: ATCC 49650, CCUG 47451, CDC 86-701, CIP 105223, DSM 44625, KCTC 19088, M. mucogenicum, Mycobacterium mucogenicum, strain MO76
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.