LINJ_35_2490 protein (Leishmania infantum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LINJ_35_2490

Uncharacterized protein. (274 aa)

Predicted Functional Partners:

LINJ_03_0190

0.774

ALDH2

0.774

LINJ_30_2920

0.774

LINJ_36_1840

0.774

LINJ_36_5410

0.774

LINJ.12.0310

0.709

EF1G

0.705

EF1G-2

0.705

LINJ_33_1630

0.705

LINJ_30_0630

0.637

Your Current Organism:

Leishmania infantum

NCBI taxonomy Id: 5671
Other names: L. infantum, Leishmania (Leishmania) infantum, Leishmania donovani infantum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALDH2	LINJ.12.0310	A4I1F4	E9AGC3	Aldehyde dehydrogenase, mitochondrial; Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein.	0.573
ALDH2	LINJ_03_0190	A4I1F4	A4HRT1	Aldehyde dehydrogenase, mitochondrial; Belongs to the aldehyde dehydrogenase family.	Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.801
ALDH2	LINJ_30_0630	A4I1F4	A4I589	Aldehyde dehydrogenase, mitochondrial; Belongs to the aldehyde dehydrogenase family.	Putative nitrate reductase.	0.700
ALDH2	LINJ_35_2490	A4I1F4	A4IBF4	Aldehyde dehydrogenase, mitochondrial; Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein.	0.774
EF1G	LINJ.12.0310	A4HU18	E9AGC3	Elongation factor-1 gamma.	Uncharacterized protein.	0.473
EF1G	LINJ_35_2490	A4HU18	A4IBF4	Elongation factor-1 gamma.	Uncharacterized protein.	0.705
EF1G-2	LINJ.12.0310	A4HU19	E9AGC3	Elongation factor-1 gamma.	Uncharacterized protein.	0.473
EF1G-2	LINJ_35_2490	A4HU19	A4IBF4	Elongation factor-1 gamma.	Uncharacterized protein.	0.705
LINJ.12.0310	ALDH2	E9AGC3	A4I1F4	Uncharacterized protein.	Aldehyde dehydrogenase, mitochondrial; Belongs to the aldehyde dehydrogenase family.	0.573
LINJ.12.0310	EF1G	E9AGC3	A4HU18	Uncharacterized protein.	Elongation factor-1 gamma.	0.473
LINJ.12.0310	EF1G-2	E9AGC3	A4HU19	Uncharacterized protein.	Elongation factor-1 gamma.	0.473
LINJ.12.0310	LINJ_33_1630	E9AGC3	A4I925	Uncharacterized protein.	Putative elongation factor 1-gamma; Belongs to the GST superfamily.	0.473
LINJ.12.0310	LINJ_35_2490	E9AGC3	A4IBF4	Uncharacterized protein.	Uncharacterized protein.	0.709
LINJ_03_0190	ALDH2	A4HRT1	A4I1F4	Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.	Aldehyde dehydrogenase, mitochondrial; Belongs to the aldehyde dehydrogenase family.	0.801
LINJ_03_0190	LINJ_30_0630	A4HRT1	A4I589	Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.	Putative nitrate reductase.	0.686
LINJ_03_0190	LINJ_35_2490	A4HRT1	A4IBF4	Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein.	0.774
LINJ_30_0630	ALDH2	A4I589	A4I1F4	Putative nitrate reductase.	Aldehyde dehydrogenase, mitochondrial; Belongs to the aldehyde dehydrogenase family.	0.700
LINJ_30_0630	LINJ_03_0190	A4I589	A4HRT1	Putative nitrate reductase.	Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.686
LINJ_30_0630	LINJ_30_2920	A4I589	A4I5W9	Putative nitrate reductase.	Putative aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.685
LINJ_30_0630	LINJ_35_2490	A4I589	A4IBF4	Putative nitrate reductase.	Uncharacterized protein.	0.637