LOC109979353 protein (Labrus bergylta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC109979353

UBIQUITIN_CONJUGAT_2 domain-containing protein. (879 aa)

Predicted Functional Partners:

trip12

0.951

ENSLBEP00000020184

0.944

fancm

0.891

nap1l1

0.871

LOC109976847

0.862

uba52

0.862

uba6

0.853

uba1

0.853

LOC109980586

0.853

LOC109989387

0.846

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000020184	LOC109976847	ENSLBEP00000020184	ENSLBEP00000007421	Ubiquitin-conjugating enzyme E2 variant 1.	Ubiquitin-like domain-containing protein.	0.999
ENSLBEP00000020184	LOC109979353	ENSLBEP00000020184	ENSLBEP00000019349	Ubiquitin-conjugating enzyme E2 variant 1.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.944
ENSLBEP00000020184	LOC109980586	ENSLBEP00000020184	ENSLBEP00000027745	Ubiquitin-conjugating enzyme E2 variant 1.	Ubiquitin-like modifier activating enzyme 7; Belongs to the ubiquitin-activating E1 family.	0.986
ENSLBEP00000020184	fancm	ENSLBEP00000020184	ENSLBEP00000006579	Ubiquitin-conjugating enzyme E2 variant 1.	Uncharacterized protein.	0.750
ENSLBEP00000020184	trip12	ENSLBEP00000020184	ENSLBEP00000035858	Ubiquitin-conjugating enzyme E2 variant 1.	Thyroid hormone receptor interactor 12.	0.614
ENSLBEP00000020184	uba1	ENSLBEP00000020184	ENSLBEP00000010587	Ubiquitin-conjugating enzyme E2 variant 1.	Ubiquitin-like modifier activating enzyme 1; Belongs to the ubiquitin-activating E1 family.	0.986
ENSLBEP00000020184	uba52	ENSLBEP00000020184	ENSLBEP00000037051	Ubiquitin-conjugating enzyme E2 variant 1.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.999
ENSLBEP00000020184	uba6	ENSLBEP00000020184	ENSLBEP00000004229	Ubiquitin-conjugating enzyme E2 variant 1.	Ubiquitin like modifier activating enzyme 6.	0.986
LOC109976847	ENSLBEP00000020184	ENSLBEP00000007421	ENSLBEP00000020184	Ubiquitin-like domain-containing protein.	Ubiquitin-conjugating enzyme E2 variant 1.	0.999
LOC109976847	LOC109979353	ENSLBEP00000007421	ENSLBEP00000019349	Ubiquitin-like domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.862
LOC109976847	LOC109980586	ENSLBEP00000007421	ENSLBEP00000027745	Ubiquitin-like domain-containing protein.	Ubiquitin-like modifier activating enzyme 7; Belongs to the ubiquitin-activating E1 family.	0.964
LOC109976847	fancm	ENSLBEP00000007421	ENSLBEP00000006579	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.990
LOC109976847	trip12	ENSLBEP00000007421	ENSLBEP00000035858	Ubiquitin-like domain-containing protein.	Thyroid hormone receptor interactor 12.	0.984
LOC109976847	uba1	ENSLBEP00000007421	ENSLBEP00000010587	Ubiquitin-like domain-containing protein.	Ubiquitin-like modifier activating enzyme 1; Belongs to the ubiquitin-activating E1 family.	0.964
LOC109976847	uba6	ENSLBEP00000007421	ENSLBEP00000004229	Ubiquitin-like domain-containing protein.	Ubiquitin like modifier activating enzyme 6.	0.964
LOC109979353	ENSLBEP00000020184	ENSLBEP00000019349	ENSLBEP00000020184	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-conjugating enzyme E2 variant 1.	0.944
LOC109979353	LOC109976847	ENSLBEP00000019349	ENSLBEP00000007421	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-like domain-containing protein.	0.862
LOC109979353	LOC109980586	ENSLBEP00000019349	ENSLBEP00000027745	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-like modifier activating enzyme 7; Belongs to the ubiquitin-activating E1 family.	0.853
LOC109979353	LOC109989387	ENSLBEP00000019349	ENSLBEP00000037487	UBIQUITIN_CONJUGAT_2 domain-containing protein.	RAN binding protein 2.	0.846
LOC109979353	fancm	ENSLBEP00000019349	ENSLBEP00000006579	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.891