Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SYN_00431 | SYN_00432 | SYN_00431 | SYN_00432 | Chemotaxis protein. | Methyl-accepting chemotaxis protein. | 0.998 |
SYN_00431 | SYN_00433 | SYN_00431 | SYN_00433 | Chemotaxis protein. | Chemotaxis protein. | 0.999 |
SYN_00431 | SYN_00434 | SYN_00431 | SYN_00434 | Chemotaxis protein. | Chemotaxis protein methyltransferase. | 0.992 |
SYN_00431 | SYN_00435 | SYN_00431 | SYN_00435 | Chemotaxis protein. | Chemotaxis protein. | 0.999 |
SYN_00431 | SYN_00963 | SYN_00431 | SYN_00963 | Chemotaxis protein. | Chemotaxis protein. | 0.776 |
SYN_00431 | SYN_00970 | SYN_00431 | SYN_00970 | Chemotaxis protein. | Chemotaxis protein methyltransferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP. | 0.979 |
SYN_00431 | SYN_00975 | SYN_00431 | SYN_00975 | Chemotaxis protein. | Chemotaxis protein. | 0.998 |
SYN_00431 | cheB1 | SYN_00431 | SYN_00430 | Chemotaxis protein. | Protein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.999 |
SYN_00431 | cheB2 | SYN_00431 | SYN_00964 | Chemotaxis protein. | Protein-glutamate methylesterase CheB; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.997 |
SYN_00431 | cheD1 | SYN_00431 | SYN_00969 | Chemotaxis protein. | Chemotaxis protein that stimulates methylation of MCP proteins; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family. | 0.944 |
SYN_00432 | SYN_00431 | SYN_00432 | SYN_00431 | Methyl-accepting chemotaxis protein. | Chemotaxis protein. | 0.998 |
SYN_00432 | SYN_00433 | SYN_00432 | SYN_00433 | Methyl-accepting chemotaxis protein. | Chemotaxis protein. | 0.997 |
SYN_00432 | SYN_00434 | SYN_00432 | SYN_00434 | Methyl-accepting chemotaxis protein. | Chemotaxis protein methyltransferase. | 0.997 |
SYN_00432 | SYN_00435 | SYN_00432 | SYN_00435 | Methyl-accepting chemotaxis protein. | Chemotaxis protein. | 0.997 |
SYN_00432 | SYN_00963 | SYN_00432 | SYN_00963 | Methyl-accepting chemotaxis protein. | Chemotaxis protein. | 0.995 |
SYN_00432 | SYN_00970 | SYN_00432 | SYN_00970 | Methyl-accepting chemotaxis protein. | Chemotaxis protein methyltransferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP. | 0.989 |
SYN_00432 | SYN_00975 | SYN_00432 | SYN_00975 | Methyl-accepting chemotaxis protein. | Chemotaxis protein. | 0.994 |
SYN_00432 | cheB1 | SYN_00432 | SYN_00430 | Methyl-accepting chemotaxis protein. | Protein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.995 |
SYN_00432 | cheB2 | SYN_00432 | SYN_00964 | Methyl-accepting chemotaxis protein. | Protein-glutamate methylesterase CheB; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.987 |
SYN_00432 | cheD1 | SYN_00432 | SYN_00969 | Methyl-accepting chemotaxis protein. | Chemotaxis protein that stimulates methylation of MCP proteins; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family. | 0.972 |
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