STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYN_01428HD domain protein. (660 aa)    
Predicted Functional Partners:
SYN_01481
Adenylate cyclase.
 
  
0.942
SYN_01363
Adenylate and guanylate cyclase catalytic domain protein.
 
 
0.933
SYN_02853
Adenylate cyclase.
     
 0.910
SYN_02952
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 0.908
SYN_00904
GTP pyrophosphokinase / guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
     
  0.900
SYN_01358
Hypothetical membrane protein.
     
  0.900
SYN_01575
relA / spoT related protein.
     
 0.900
SYN_01979
Anaerobic ribonucleoside-triphosphate reductase.
     
  0.900
SYN_03150
Phosphohydrolase; mutT/nudix family protein; Belongs to the Nudix hydrolase family.
     
 0.900
SYN_03522
Anaerobic ribonucleoside-triphosphate reductase.
     
  0.900
Your Current Organism:
Syntrophus aciditrophicus
NCBI taxonomy Id: 56780
Other names: S. aciditrophicus SB, Syntrophus aciditrophicus SB, Syntrophus aciditrophicus str. SB, Syntrophus aciditrophicus strain SB
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