Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SYN_00557 | SYN_01002 | SYN_00557 | SYN_01002 | Aldolase. | Phosphoglycerate mutase. | 0.844 |
SYN_00557 | SYN_01447 | SYN_00557 | SYN_01447 | Aldolase. | Transketolase; Belongs to the transketolase family. | 0.947 |
SYN_00557 | SYN_01810 | SYN_00557 | SYN_01810 | Aldolase. | Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | 0.978 |
SYN_00557 | SYN_02952 | SYN_00557 | SYN_02952 | Aldolase. | Pyruvate kinase; Belongs to the pyruvate kinase family. | 0.898 |
SYN_00557 | SYN_02954 | SYN_00557 | SYN_02954 | Aldolase. | Fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis; Belongs to the class II fructose-bisphosphate aldolase family. | 0.900 |
SYN_00557 | SYN_03790 | SYN_00557 | SYN_03790 | Aldolase. | Triosephosphate isomerase. | 0.977 |
SYN_00557 | eno | SYN_00557 | SYN_01733 | Aldolase. | Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. | 0.958 |
SYN_00557 | pgi | SYN_00557 | SYN_02950 | Aldolase. | Glucose-6-phosphate isomerase / glucose-6 phosphate 1-epimerase; Bifunctional. | 0.951 |
SYN_00557 | pgk | SYN_00557 | SYN_01396 | Aldolase. | Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family. | 0.864 |
SYN_01002 | SYN_00557 | SYN_01002 | SYN_00557 | Phosphoglycerate mutase. | Aldolase. | 0.844 |
SYN_01002 | SYN_01447 | SYN_01002 | SYN_01447 | Phosphoglycerate mutase. | Transketolase; Belongs to the transketolase family. | 0.862 |
SYN_01002 | SYN_01810 | SYN_01002 | SYN_01810 | Phosphoglycerate mutase. | Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | 0.647 |
SYN_01002 | SYN_02952 | SYN_01002 | SYN_02952 | Phosphoglycerate mutase. | Pyruvate kinase; Belongs to the pyruvate kinase family. | 0.517 |
SYN_01002 | SYN_02954 | SYN_01002 | SYN_02954 | Phosphoglycerate mutase. | Fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis; Belongs to the class II fructose-bisphosphate aldolase family. | 0.850 |
SYN_01002 | SYN_03790 | SYN_01002 | SYN_03790 | Phosphoglycerate mutase. | Triosephosphate isomerase. | 0.871 |
SYN_01002 | eno | SYN_01002 | SYN_01733 | Phosphoglycerate mutase. | Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. | 0.995 |
SYN_01002 | pgi | SYN_01002 | SYN_02950 | Phosphoglycerate mutase. | Glucose-6-phosphate isomerase / glucose-6 phosphate 1-epimerase; Bifunctional. | 0.892 |
SYN_01002 | pgk | SYN_01002 | SYN_01396 | Phosphoglycerate mutase. | Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family. | 0.991 |
SYN_01447 | SYN_00557 | SYN_01447 | SYN_00557 | Transketolase; Belongs to the transketolase family. | Aldolase. | 0.947 |
SYN_01447 | SYN_01002 | SYN_01447 | SYN_01002 | Transketolase; Belongs to the transketolase family. | Phosphoglycerate mutase. | 0.862 |
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