STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYN_01875DNA transfer and F pilus assembly protein. (1012 aa)    
Predicted Functional Partners:
SYN_01874
Pilus assembly protein.
     
 0.771
SYN_01865
Sex pilus assembly protein.
     
 0.762
SYN_01868
Hypothetical cytosolic protein.
     
 0.762
SYN_01870
Hypothetical cytosolic protein.
     
 0.743
SYN_01869
Conjugal DNA transfer protein.
     
 0.736
SYN_01862
Hypothetical exported protein.
       0.734
SYN_01863
Pilus assembly protein.
       0.734
SYN_01871
Hypothetical membrane protein.
       0.734
SYN_01872
Type IV secretory protease.
       0.734
SYN_01867
Hypothetical exported protein.
     
 0.729
Your Current Organism:
Syntrophus aciditrophicus
NCBI taxonomy Id: 56780
Other names: S. aciditrophicus SB, Syntrophus aciditrophicus SB, Syntrophus aciditrophicus str. SB, Syntrophus aciditrophicus strain SB
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.