STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYN_02276Precorrin-2 dehydrogenase / Sirohydrochlorin ferrochelatase; Bifunctional. (216 aa)    
Predicted Functional Partners:
SYN_02272
uroporphyrin-III C-methyltransferase / uroporphyrinogen-III synthase; Bifunctional.
 
 0.999
hemC
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
  
 0.981
SYN_02265
Transcriptional regulator AsnC family.
 
  
 0.924
hemL
Glutamate-1-semialdehyde 2,1-aminomutase.
   
 0.896
hemA
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
 
   
 0.887
SYN_03385
Heme insertion protein; Bacterial system II.
       0.800
SYN_02267
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
 
   
 0.629
SYN_01895
Hypothetical cytosolic protein.
  
  
 0.608
SYN_02703
5-methyltetrahydrofolate--homocysteine methyltransferase.
     
 0.525
SYN_01225
Sulfite reductase, assimilatory-type; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
  
 0.521
Your Current Organism:
Syntrophus aciditrophicus
NCBI taxonomy Id: 56780
Other names: S. aciditrophicus SB, Syntrophus aciditrophicus SB, Syntrophus aciditrophicus str. SB, Syntrophus aciditrophicus strain SB
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