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Acin_0105 protein (Acidaminococcus intestini) - STRING interaction network
"Acin_0105" - Radical SAM family protein in Acidaminococcus intestini
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acin_0105Radical SAM family protein (474 aa)    
Predicted Functional Partners:
Acin_0104
Hypothetical protein (47 aa)
 
     
  0.910
ldcC
Orn/lys/arg decarboxylase (486 aa)
 
          0.613
rpoA
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (323 aa)
   
          0.584
Acin_1896
Hypothetical protein (320 aa)
 
          0.578
Acin_1145
Aluminum resistance protein (411 aa)
 
          0.527
whiA
Hypothetical protein; May be required for sporulation (310 aa)
 
          0.513
polC
DNA polymerase III; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3’ to 5’ exonuclease activity (1210 aa)
   
          0.458
recJ
Exonuclease recJ (778 aa)
 
          0.455
Acin_0101
Hypothetical protein; Required for morphogenesis under gluconeogenic growth conditions (463 aa)
              0.430
Acin_0103
Polysaccharide deacetylase (277 aa)
              0.424
Your Current Organism:
Acidaminococcus intestini
NCBI taxonomy Id: 568816
Other names: A. intestini, A. intestini RyC-MR95, Acidaminococcus intestini, Acidaminococcus intestini Jumas-Bilak et al. 2007, Acidaminococcus intestini RyC-MR95, Acidaminococcus intestini strain RyC-MR95, Acidaminococcus sp. ADV 255.99
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