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mmsB protein (Acidaminococcus intestini) - STRING interaction network
"mmsB" - 3-hydroxyisobutyrate dehydrogenase in Acidaminococcus intestini
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mmsB3-hydroxyisobutyrate dehydrogenase (302 aa)    
Predicted Functional Partners:
Acin_0724
Aldehyde dehydrogenase (495 aa)
   
  0.936
argD
Ornithine/acetylornithine aminotransferase (396 aa)
     
 
    0.902
Acin_0235
ABC transporter substrate-binding protein (349 aa)
              0.681
Acin_0238
Hypothetical protein (131 aa)
   
        0.507
Acin_0236
Fe(III)-transport system permease sfuB (560 aa)
              0.488
pdxK
Pyridoxine kinase (306 aa)
       
      0.468
Acin_0747
Hypothetical protein (293 aa)
       
      0.468
crt
enoyl-CoA hydratase/carnithine racemase (262 aa)
   
   
  0.466
Acin_0237
ABC transporter-like protein (356 aa)
              0.460
Acin_0489
butyryl-CoA dehydrogenase (591 aa)
   
   
  0.451
Your Current Organism:
Acidaminococcus intestini
NCBI taxonomy Id: 568816
Other names: A. intestini, A. intestini RyC-MR95, Acidaminococcus intestini, Acidaminococcus intestini Jumas-Bilak et al. 2007, Acidaminococcus intestini RyC-MR95, Acidaminococcus intestini strain RyC-MR95, Acidaminococcus sp. ADV 255.99
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